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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other congenital disorders
Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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115 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABHD12B
ENSSSCG00000005023
ENSG00000131969
Abhydrolase domain containing 12B
Low tissue specificity
Detected in all
ALDH3A1
ENSSSCG00000018044
ENSG00000108602
Aldehyde dehydrogenase 3 family member A1
Tissue enriched
Detected in some
cornea:
707.1
ASPG
ENSSSCG00000039553
ENSG00000166183
Asparaginase
Tissue enhanced
Detected in many
liver:
7.6
male glands:
8.2
mesothelial tissue:
9.5
skin:
8.5
BARX2
ENSSSCG00000036157
ENSG00000043039
BARX homeobox 2
Tissue enhanced
Detected in many
male glands:
31.0
mouth:
27.1
skin:
19.3
BECN2
ENSSSCG00000010868
ENSG00000196289
Beclin 2
Tissue enriched
Detected in some
cornea:
5.0
BNC1
ENSSSCG00000001798
ENSG00000169594
Basonuclin 1
Tissue enhanced
Detected in some
adipose tissue:
18.1
cornea:
34.6
mesothelial tissue:
41.0
skin:
23.0
BNIPL
ENSSSCG00000006640
ENSG00000163141
BCL2 interacting protein like
Tissue enhanced
Detected in many
mouth:
38.6
skin:
36.8
CALML5
ENSSSCG00000011141
ENSG00000178372
Calmodulin like 5
Group enriched
Detected in some
mouth:
18.9
skin:
62.5
CHAT
ENSSSCG00000010392
ENSG00000070748
Choline O-acetyltransferase
Tissue enhanced
Detected in all
brain:
14.4
cornea:
23.6
CLCA2
ENSSSCG00000006935
ENSG00000137975
Chloride channel accessory 2
Tissue enhanced
Detected in all
cornea:
39.9
male glands:
40.5
skin:
26.2
CRNN
ENSSSCG00000006604
ENSG00000143536
Cornulin
Tissue enriched
Detected in all
mouth:
102.2
DSG3
ENSSSCG00000027160
ENSG00000134757
Desmoglein 3
Group enriched
Detected in many
cornea:
35.0
esophagus:
18.7
mouth:
66.6
skin:
41.8
DUOX1
ENSSSCG00000004675
ENSG00000137857
Dual oxidase 1 precursor
Tissue enhanced
Detected in many
mouth:
24.9
thyroid gland:
16.7
EPS8L1
ENSSSCG00000026417
ENSG00000131037
EPS8 like 1
Tissue enhanced
Detected in many
mouth:
51.3
skin:
53.4
FAM83A
ENSSSCG00000005986
ENSG00000147689
Family with sequence similarity 83 member A
Tissue enriched
Detected in many
cornea:
59.3
FAM83C
ENSSSCG00000028858
ENSG00000125998
Family with sequence similarity 83 member C
Tissue enhanced
Detected in many
cornea:
24.1
mouth:
17.0
skin:
12.5
FAT2
ENSSSCG00000017084
ENSG00000086570
FAT atypical cadherin 2
Tissue enriched
Detected in many
brain:
98.8
FOXN1
ENSSSCG00000017762
ENSG00000109101
Forkhead box N1
Group enriched
Detected in many
cornea:
11.5
lymphoid tissue:
11.5
mouth:
17.0
skin:
34.8
GJB5
ENSSSCG00000003585
ENSG00000189280
Gap junction protein beta 5
Group enriched
Detected in some
cornea:
33.3
mouth:
14.1
skin:
11.4
upper respiratory system:
10.2
GPHA2
ENSSSCG00000013015
ENSG00000149735
Glycoprotein hormone alpha 2
Tissue enriched
Detected in some
cornea:
83.9
HOXC12
ENSSSCG00000000281
ENSG00000123407
Homeobox C12
Tissue enriched
Detected in some
urinary bladder:
5.3
IL19
ENSSSCG00000015653
ENSG00000142224
Interleukin 19
Group enriched
Detected in some
lymphoid tissue:
5.1
upper respiratory system:
2.0
IL1RL2
ENSSSCG00000023550
ENSG00000115598
Interleukin 1 receptor like 2
Group enriched
Detected in some
cornea:
34.7
mouth:
26.2
skin:
62.1
IL20RB
ENSSSCG00000022500
ENSG00000174564
Interleukin 20 receptor subunit beta
Tissue enhanced
Detected in some
cornea:
34.2
lymphoid tissue:
53.8
skin:
17.3
KERA
ENSSSCG00000000917
ENSG00000139330
Keratocan
Tissue enriched
Detected in many
cornea:
288.6
KRT12
ENSSSCG00000017460
ENSG00000187242
Keratin 12
Tissue enriched
Detected in single
cornea:
786.3
KRT13
ENSSSCG00000017445
ENSG00000171401
Keratin 13
Tissue enriched
Detected in some
mouth:
692.3
KRT15
ENSSSCG00000017444
ENSG00000171346
Keratin 15
Tissue enhanced
Detected in some
esophagus:
57.2
mouth:
174.6
skin:
65.5
upper respiratory system:
44.1
KRT3
ENSSSCG00000023254
ENSG00000186442
Keratin 3
Tissue enriched
Detected in some
cornea:
465.8
KRT4
ENSSSCG00000024610
ENSG00000170477
Keratin 4
Group enriched
Detected in some
esophagus:
91.9
mouth:
354.0
KRT5
ENSSSCG00000000248
ENSG00000186081
Keratin 5
Group enriched
Detected in many
cornea:
115.8
mouth:
325.7
skin:
162.7
LMX1B
ENSSSCG00000035968
ENSG00000136944
LIM homeobox transcription factor 1-beta
Tissue enhanced
Detected in some
breast:
15.4
cornea:
29.1
LTB4R
ENSSSCG00000027911
ENSG00000213903
Leukotriene B4 receptor
Tissue enhanced
Detected in many
dura mater:
8.1
lymphoid tissue:
7.8
ovary:
6.8
LY6D
ENSSSCG00000037524
ENSG00000167656
Lymphocyte antigen 6 family member D
Group enriched
Detected in some
mouth:
60.2
skin:
33.4
upper respiratory system:
27.3
urinary bladder:
41.6
LYPD2
ENSSSCG00000036119
ENSG00000197353
LY6/PLAUR domain containing 2
Tissue enriched
Detected in some
cornea:
126.7
LYPD3
ENSSSCG00000003062
ENSG00000124466
LY6/PLAUR domain containing 3
Group enriched
Detected in some
cornea:
51.4
mouth:
55.6
skin:
24.5
MTNR1A
ENSSSCG00000007002
ENSG00000168412
Melatonin receptor 1A
Tissue enriched
Detected in some
mesothelial tissue:
17.7
na
ENSSSCG00000003166
Tissue enhanced
Detected in many
cornea:
11.2
mouth:
8.6
skin:
10.7
na
ENSSSCG00000007082
ENSG00000125879
Tissue enriched
Detected in some
cornea:
111.0
na
ENSSSCG00000007527
ENSG00000124205
Endothelin-3
Tissue enhanced
Detected in all
cornea:
48.1
na
ENSSSCG00000007631
Tissue enriched
Detected in single
cornea:
5.7
na
ENSSSCG00000007639
Tissue enriched
Detected in single
cornea:
5.2
na
ENSSSCG00000008928
Tissue enhanced
Detected in some
lymphoid tissue:
5.5
mouth:
8.8
upper respiratory system:
6.6
na
ENSSSCG00000008929
Tissue enhanced
Detected in some
cornea:
7.9
lymphoid tissue:
15.7
mouth:
8.3
upper respiratory system:
12.0
na
ENSSSCG00000025086
ENSG00000062096
Tissue enhanced
Detected in some
lymphoid tissue:
9.6
skin:
35.5
upper respiratory system:
26.7
na
ENSSSCG00000029127
Tissue enhanced
Detected in some
epididymis:
3.9
kidney:
6.2
stomach:
6.1
urinary bladder:
8.4
na
ENSSSCG00000031411
Group enriched
Detected in some
cornea:
4.3
male glands:
1.3
na
ENSSSCG00000031419
Low tissue specificity
Detected in many
na
ENSSSCG00000031581
ENSG00000125879
Tissue enriched
Detected in some
cornea:
45.1
na
ENSSSCG00000031933
ENSG00000185960
Tissue enhanced
Detected in some
brain:
6.4
cornea:
19.2
penis:
21.9
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